Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
833
total RNA-seq
679
ChIP-seq
201
ATAC-seq
173
single cell RNA-seq
169
DNase-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
21
WGBS
14
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1019
Transcription
679
DNA binding
402
DNA accessibility
31
DNA methylation
14
3D chromatin structure
Target of assay
504
histone
504
histone modification
262
narrow histone mark
242
broad histone mark
125
control
52
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
230
August, 2017
223
August, 2021
210
October, 2019
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2019
62
July, 2019
60
February, 2023
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
34
March, 2020
26
May, 2022
23
October, 2017
February, 2020
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1532
bam
1437
bigWig
887
tsv
771
bed narrowPeak
450
bigBed narrowPeak
294
fastq
205
bed broadPeak
194
bed bed3+
168
bigBed broadPeak
168
tagAlign
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
9
hic
8
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2253
Homo sapiens
Biosample type
2262
tissue
1038
primary cell
379
in vitro differentiated cells
195
cell line
10
stem cell
Organ
545
connective tissue
504
pancreas
486
adipose tissue
liver
310
heart
299
kidney
253
brain
158
bone element
130
blood vessel
vasculature
119
limb
80
musculature of body
71
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
2165
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1516
GRCh38
1417
hg19
Lab
1950
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2020
organ_slims!
vasculature
liver
BIOSAMPLE
ASSAY
2262 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
3
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
+ See 164 more…
See all biosamples
Download