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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
169
total RNA-seq
111
ChIP-seq
21
ATAC-seq
4
DNase-seq
4
WGBS
3
small RNA-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
173
Transcription
111
DNA binding
25
DNA accessibility
5
DNA methylation
1
3D chromatin structure
Target of assay
70
histone modification
69
histone
46
control
narrow histone mark
39
transcription factor
25
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
166
May, 2020
46
December, 2017
41
August, 2017
40
May, 2022
8
July, 2019
7
November, 2018
4
October, 2019
3
March, 2020
February, 2020
1
February, 2021
Available data
252
bam
229
bigWig
153
tsv
77
bed narrowPeak
76
fastq
46
bigBed narrowPeak
37
tagAlign
6
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
csv
1
hic
Organism
316
Homo sapiens
Biosample type
392
cell line
316
tissue
12
primary cell
10
in vitro differentiated cells
Organ
532
connective tissue
474
adipose tissue
472
pancreas
316
liver
289
kidney
272
heart
158
bone element
139
brain
112
blood vessel
112
vasculature
104
limb
71
musculature of body
65
artery
53
eye
34
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
316
AMP
Genome assembly (visualization)
232
hg19
210
GRCh38
Lab
276
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
month_released!
February, 2020
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
316 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
103
20
2
3
1
1
1
1
1
right lobe of liver
2
8
1
2
1
2
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