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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
45
DNase-seq
39
ATAC-seq
12
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
123
DNA binding
106
Transcription
84
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
45
June, 2019
40
May, 2024
36
February, 2023
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
February, 2020
2
May, 2021
Available data
191
bed narrowPeak
175
bigWig
150
bam
108
tsv
106
bigBed narrowPeak
45
bed bed3+
45
bed broadPeak
45
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
328
Homo sapiens
Biosample type
328
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
545
connective tissue
504
pancreas
486
adipose tissue
360
liver
310
heart
299
kidney
253
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
80
musculature of body
71
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
328
AMP
Genome assembly (visualization)
209
GRCh38
131
hg19
Lab
288
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
February, 2020
BIOSAMPLE
ASSAY
328 results
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ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
2
36
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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