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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
924
total RNA-seq
864
ChIP-seq
178
DNase-seq
131
ATAC-seq
113
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
1053
Transcription
864
DNA binding
315
DNA accessibility
38
DNA methylation
13
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
40
March, 2020
40
November, 2019
38
May, 2021
February, 2020
23
November, 2018
22
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1879
bam
1708
bigWig
1050
tsv
839
bed narrowPeak
558
bigBed narrowPeak
348
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
25
bed bedMethyl
25
bigBed bedMethyl
9
bedpe bed3+
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2389
Homo sapiens
Biosample type
2397
tissue
613
cell line
524
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
545
connective tissue
486
adipose tissue
441
pancreas
320
liver
270
heart
253
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
110
kidney
80
musculature of body
71
artery
55
eye
42
nerve
22
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
2393
AMP
4
T1D
Genome assembly (visualization)
1738
GRCh38
1709
hg19
Lab
2397
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2020
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
2397 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
280
71
1
34
6
4
1
1
1
1
adipose tissue
382
2
3
3
1
liver
147
145
2
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
3
2
18
4
1
1
1
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