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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
593
total RNA-seq
252
ATAC-seq
DNase-seq
168
single cell RNA-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
867
DNA binding
777
Transcription
284
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
282
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
23
October, 2017
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1278
bam
1111
bigWig
759
bed narrowPeak
624
tsv
384
bigBed narrowPeak
367
fastq
238
tagAlign
68
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2005
Homo sapiens
Biosample type
2014
tissue
1009
primary cell
564
cell line
367
in vitro differentiated cells
10
stem cell
Organ
498
pancreas
356
liver
246
heart
238
brain
223
kidney
128
blood vessel
128
vasculature
101
connective tissue
100
adipose tissue
80
limb
69
artery
53
eye
50
musculature of body
41
nerve
24
spleen
20
lung
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1917
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1190
GRCh38
1142
hg19
Lab
1702
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
6
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
2014 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
71
298
68
7
4
3
1
1
4
liver
145
167
20
3
1
1
1
1
kidney
27
49
75
59
6
1
1
1
heart left ventricle
35
3
2
18
4
1
1
1
body of pancreas
35
3
4
2
2
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