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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
722
ChIP-seq
463
total RNA-seq
177
DNase-seq
56
ATAC-seq
17
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
722
DNA binding
479
Transcription
237
DNA accessibility
17
DNA methylation
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
February, 2021
193
May, 2020
186
October, 2019
170
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
26
November, 2018
24
May, 2022
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1455
bam
1288
bigWig
936
bed narrowPeak
624
tsv
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1448
Homo sapiens
Biosample type
1455
tissue
606
primary cell
487
cell line
269
in vitro differentiated cells
3
stem cell
Organ
429
pancreas
288
liver
226
brain
132
heart
108
limb
98
kidney
87
blood vessel
87
vasculature
54
adipose tissue
54
connective tissue
44
musculature of body
42
nerve
34
artery
24
spleen
18
ureter
3
eye
1
pituitary gland
Project
1453
AMP
2
T1D
Genome assembly (visualization)
1251
GRCh38
1196
hg19
Lab
1430
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
February, 2021
BIOSAMPLE
ASSAY
1455 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
islet of Langerhans
30
272
1
38
1
liver
122
147
2
1
body of pancreas
35
2
4
4
2
2
heart left ventricle
34
3
3
2
2
tibial nerve
35
4
2
1
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