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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
925
total RNA-seq
109
single cell RNA-seq
20
pCHi-C
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
ATAC-seq
Assay category
1034
Transcription
1
DNA accessibility
Date released
452
February, 2021
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
38
May, 2021
31
July, 2019
28
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
2
December, 2019
Available data
1714
bam
1577
bigWig
1060
tsv
807
bed narrowPeak
384
bigBed narrowPeak
367
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1060
Homo sapiens
Biosample type
1060
tissue
268
primary cell
131
in vitro differentiated cells
119
cell line
4
stem cell
Organ
455
connective tissue
397
adipose tissue
273
pancreas
151
liver
110
heart
58
bone element
19
brain
14
blood vessel
14
vasculature
11
kidney
7
limb
6
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1060
AMP
Genome assembly (visualization)
902
hg19
901
GRCh38
Lab
1059
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
7
audit script error
3
inconsistent ontology term
month_released!
January, 2018
assay_title!
DNase-seq
small RNA-seq
BIOSAMPLE
ASSAY
1060 results
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total RNA-seq
single cell RNA-seq
pCHi-C
snDrop-seq
RNA microarray
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
261
6
1
liver
147
1
bone tissue
58
heart left ventricle
3
18
1
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