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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
total RNA-seq
683
ChIP-seq
177
DNase-seq
60
ATAC-seq
18
WGBS
16
small RNA-seq
4
FAIRE-seq
3
RRBS
Assay category
923
Transcription
683
DNA binding
241
DNA accessibility
21
DNA methylation
Target of assay
523
histone modification
522
histone
268
narrow histone mark
254
broad histone mark
93
transcription factor
67
control
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
195
August, 2017
170
May, 2020
163
June, 2019
160
October, 2019
116
July, 2018
93
May, 2019
72
October, 2018
65
April, 2019
63
July, 2019
57
November, 2017
48
December, 2017
44
May, 2022
40
May, 2024
38
May, 2021
26
November, 2018
19
November, 2019
17
October, 2017
11
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
January, 2018
1
March, 2019
Available data
1907
bam
1770
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1861
Homo sapiens
Biosample type
1868
tissue
787
primary cell
576
cell line
279
in vitro differentiated cells
3
stem cell
Organ
500
connective tissue
442
adipose tissue
416
pancreas
287
liver
205
brain
157
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
58
musculature of body
31
nerve
27
artery
24
spleen
18
ureter
3
eye
1
pituitary gland
Project
1866
AMP
2
T1D
Genome assembly (visualization)
1715
GRCh38
1669
hg19
Lab
1782
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2018
BIOSAMPLE
ASSAY
1868 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
RRBS
tissue
adipose tissue
381
2
1
3
islet of Langerhans
272
36
1
22
1
liver
147
99
2
20
1
1
1
bone tissue
58
body of pancreas
2
34
4
4
2
2
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