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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1025
total RNA-seq
907
ChIP-seq
229
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
small RNA-seq
11
RRBS
5
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1215
Transcription
907
DNA binding
429
DNA accessibility
38
DNA methylation
5
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
241
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
48
December, 2017
47
September, 2023
42
May, 2022
40
May, 2024
39
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
January, 2018
1
August, 2022
Available data
1883
bam
1770
bigWig
1076
tsv
966
bed narrowPeak
561
bigBed narrowPeak
353
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2703
Homo sapiens
Biosample type
2712
tissue
843
primary cell
654
cell line
339
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
487
adipose tissue
451
pancreas
360
liver
310
heart
298
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
79
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2642
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1859
GRCh38
1724
hg19
Lab
2414
AMP-T2D consortium
141
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2018
lab.title!
Kyle Gaulton, UCSD
files.file_type!
hic
BIOSAMPLE
ASSAY
2712 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
71
39
1
4
1
1
1
1
4
adipose tissue
382
2
2
3
1
liver
167
145
20
2
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
bone element
84
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