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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1010
total RNA-seq
784
ChIP-seq
190
ATAC-seq
151
DNase-seq
87
RNA microarray
81
single cell RNA-seq
21
pCHi-C
19
WGBS
18
snATAC-seq
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1106
Transcription
784
DNA binding
363
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
234
October, 2019
193
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
57
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
41
February, 2023
40
November, 2019
36
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
January, 2018
1
August, 2022
Available data
1751
bam
1613
bigWig
965
tsv
793
bed narrowPeak
473
bigBed narrowPeak
353
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
151
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2401
Homo sapiens
Biosample type
2410
tissue
836
primary cell
590
cell line
342
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
487
adipose tissue
454
pancreas
361
liver
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2340
AMP
47
KPMP
19
LungMap
4
T1D
Genome assembly (visualization)
1668
GRCh38
1622
hg19
Lab
2150
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2018
lab.title!
Kyle Gaulton, UCSD
organ_slims!
heart
BIOSAMPLE
ASSAY
2410 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
287
71
39
1
4
1
3
1
1
4
adipose tissue
382
2
2
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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