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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
975
total RNA-seq
880
ChIP-seq
154
ATAC-seq
110
DNase-seq
110
single cell RNA-seq
85
RNA microarray
27
WGBS
24
pCHi-C
15
Hi-C
15
small RNA-seq
12
snATAC-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1100
Transcription
880
DNA binding
279
DNA accessibility
37
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
June, 2019
82
November, 2017
77
February, 2023
74
October, 2018
73
July, 2019
57
April, 2019
48
December, 2017
42
May, 2022
40
March, 2020
40
May, 2024
40
November, 2019
38
May, 2021
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
January, 2018
1
August, 2022
1
May, 2023
Available data
1785
bam
1679
bigWig
1064
tsv
813
bed narrowPeak
474
bigBed narrowPeak
353
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
89
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2415
Homo sapiens
Biosample type
2424
tissue
813
primary cell
637
cell line
343
in vitro differentiated cells
9
stem cell
Organ
546
connective tissue
487
adipose tissue
454
pancreas
361
liver
313
heart
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2401
AMP
19
LungMap
4
T1D
Genome assembly (visualization)
1694
GRCh38
1643
hg19
Lab
2313
AMP-T2D consortium
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2018
lab.title!
Kyle Gaulton, UCSD
organ_slims!
kidney
BIOSAMPLE
ASSAY
2424 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
snATAC-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
287
71
39
1
4
3
1
1
4
1
adipose tissue
382
2
2
3
1
liver
167
145
20
2
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
2
3
18
4
1
1
1
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