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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
86
RNA microarray
85
total RNA-seq
74
ATAC-seq
68
single cell RNA-seq
27
WGBS
25
pCHi-C
21
snATAC-seq
17
DNase-seq
4
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
378
DNA binding
153
Transcription
112
DNA accessibility
29
DNA methylation
4
3D chromatin structure
Target of assay
190
histone
190
histone modification
184
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
August, 2021
104
August, 2017
93
February, 2021
79
October, 2019
76
November, 2017
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
25
February, 2020
23
May, 2020
22
March, 2020
22
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
259
bam
143
bed narrowPeak
133
tagAlign
125
bigWig
99
txt
83
fastq
68
bigBed narrowPeak
59
tsv
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
Organism
792
Homo sapiens
Biosample type
794
tissue
459
primary cell
111
cell line
84
in vitro differentiated cells
6
stem cell
Organ
122
brain
108
heart
93
liver
90
pancreas
88
bone element
80
kidney
64
connective tissue
63
adipose tissue
57
blood vessel
57
vasculature
44
artery
26
eye
26
limb
21
musculature of body
20
lung
12
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
699
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1795
GRCh38
hg19
Lab
614
AMP-T2D consortium
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
month_released!
January, 2018
August, 2021
assembly!
hg19
BIOSAMPLE
ASSAY
794 results
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Clear Filters
ChIP-seq
RNA microarray
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
40
31
26
4
7
4
liver
62
20
1
3
1
bone element
84
kidney
7
11
56
left cardiac atrium
40
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