Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
27
DNase-seq
13
total RNA-seq
3
ATAC-seq
2
pCHi-C
Assay category
209
DNA binding
30
DNA accessibility
13
Transcription
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
216
bam
192
bigWig
191
bed narrowPeak
118
tagAlign
115
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
15
tsv
12
fastq
1
bed bed3
1
tagAlign bed3+
Organism
254
Homo sapiens
Biosample type
254
tissue
14
primary cell
Organ
537
connective tissue
499
pancreas
478
adipose tissue
353
liver
295
kidney
254
brain
253
heart
158
bone element
126
blood vessel
126
vasculature
117
limb
75
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
254
AMP
Genome assembly (visualization)
194
GRCh38
133
hg19
Lab
254
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
July, 2019
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
brain
20
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
angular gyrus
15
+ See 75 more…
See all biosamples
Download