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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
177
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
284
DNA binding
184
DNA accessibility
Target of assay
223
histone
223
histone modification
148
broad histone mark
75
narrow histone mark
61
transcription factor
16
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
May, 2019
64
April, 2019
57
November, 2017
47
October, 2019
45
October, 2018
36
December, 2017
22
August, 2017
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1792
bam
1639
bigWig
1076
tsv
851
bed narrowPeak
468
bigBed narrowPeak
377
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
462
Homo sapiens
Biosample type
468
tissue
355
cell line
105
primary cell
17
in vitro differentiated cells
Organ
91
brain
87
kidney
78
limb
73
heart
61
pancreas
49
liver
32
musculature of body
26
nerve
23
blood vessel
23
vasculature
22
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
468
AMP
Genome assembly (visualization)
463
GRCh38
400
hg19
Lab
468
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2019
BIOSAMPLE
ASSAY
468 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
25
4
tibial nerve
24
2
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