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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
260
ATAC-seq
248
ChIP-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
470
DNA accessibility
248
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
503
histone
276
narrow histone mark
227
broad histone mark
165
control
85
transcription factor
19
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
160
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1415
bam
1241
bigWig
1076
tsv
455
bed narrowPeak
303
fastq
245
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2115
Homo sapiens
Biosample type
2118
tissue
849
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
431
pancreas
291
liver
279
kidney
205
heart
158
bone element
78
brain
72
limb
65
blood vessel
65
vasculature
56
musculature of body
54
eye
50
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2023
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1356
GRCh38
1313
hg19
Lab
1806
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
month_released!
May, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
2118 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
68
20
1
7
4
3
1
1
4
adipose tissue
382
3
1
3
1
liver
167
20
80
2
1
3
1
1
1
1
kidney
49
75
7
13
64
6
1
1
1
bone element
84
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