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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
857
ChIP-seq
260
ATAC-seq
174
single cell RNA-seq
169
DNase-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
21
WGBS
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
857
DNA binding
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
182
control
82
transcription factor
23
RNA binding protein
2
chromatin remodeller
Date released
195
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
15
October, 2017
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
712
bam
568
bigWig
548
bed narrowPeak
370
bigBed narrowPeak
238
tagAlign
210
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
850
Homo sapiens
Biosample type
857
tissue
424
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
151
liver
117
pancreas
83
heart
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
14
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
855
AMP
2
T1D
Genome assembly (visualization)
543
GRCh38
522
hg19
Lab
857
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
BIOSAMPLE
ASSAY
857 results
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Clear Filters
ChIP-seq
tissue
liver
141
islet of Langerhans
71
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
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