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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
870
ChIP-seq
185
ATAC-seq
116
single cell RNA-seq
101
DNase-seq
85
RNA microarray
25
pCHi-C
22
snATAC-seq
21
WGBS
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
2
FAIRE-seq
Assay category
1112
Transcription
870
DNA binding
310
DNA accessibility
31
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
178
control
86
transcription factor
27
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
73
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1783
bam
1658
bigWig
1064
tsv
814
bed narrowPeak
457
bigBed narrowPeak
351
fastq
238
tagAlign
136
bed broadPeak
128
bed bed3+
99
bigBed broadPeak
95
txt
18
bed bedMethyl
18
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2443
Homo sapiens
Biosample type
2452
tissue
1051
primary cell
582
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
498
pancreas
487
adipose tissue
354
liver
313
heart
kidney
263
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
20
lung
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2402
AMP
31
T1D
19
LungMap
Genome assembly (visualization)
1672
GRCh38
1646
hg19
Lab
2289
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
November, 2018
organ_slims!
kidney
organ_slims!!
kidney
BIOSAMPLE
ASSAY
2452 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
141
20
1
1
3
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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