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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1032
total RNA-seq
823
ChIP-seq
251
ATAC-seq
173
single cell RNA-seq
146
DNase-seq
87
RNA microarray
27
snATAC-seq
26
WGBS
24
pCHi-C
15
small RNA-seq
10
Hi-C
7
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
823
DNA binding
428
DNA accessibility
33
DNA methylation
10
3D chromatin structure
Target of assay
556
histone modification
555
histone
298
narrow histone mark
257
broad histone mark
180
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
258
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
131
June, 2019
120
July, 2018
108
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
64
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
November, 2019
35
March, 2020
26
November, 2018
23
February, 2020
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1848
bam
1661
bigWig
1069
tsv
881
bed narrowPeak
517
bigBed narrowPeak
358
fastq
209
tagAlign
172
bed bed3+
164
bed broadPeak
156
txt
144
bigBed broadPeak
64
xls
22
bed bedMethyl
22
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2623
Homo sapiens
Biosample type
2632
tissue
1074
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
500
pancreas
487
adipose tissue
361
liver
299
kidney
273
heart
249
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
musculature of body
73
artery
56
eye
43
nerve
24
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2535
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1763
GRCh38
1681
hg19
Lab
2321
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2017
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
2632 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
67
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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