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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
672
ChIP-seq
174
single cell RNA-seq
87
RNA microarray
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1205
Transcription
672
DNA binding
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
425
histone modification
424
histone
244
broad histone mark
180
narrow histone mark
160
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
October, 2019
193
May, 2020
159
August, 2021
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
27
May, 2022
25
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
14
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1482
bam
1355
bigWig
1067
tsv
410
bed narrowPeak
336
fastq
335
bigBed narrowPeak
189
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
1
bedpe
Organism
2037
Homo sapiens
Biosample type
2045
tissue
773
primary cell
603
cell line
347
in vitro differentiated cells
10
stem cell
Organ
538
connective tissue
480
adipose tissue
423
pancreas
330
liver
199
heart
148
brain
146
bone element
145
kidney
67
blood vessel
67
vasculature
48
musculature of body
23
spleen
15
limb
10
lung
9
artery
5
eye
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1979
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1329
GRCh38
1311
hg19
Lab
1888
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
87
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
2045 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
284
50
3
1
4
liver
166
140
1
3
1
1
1
1
kidney
49
23
64
1
1
bone element
84
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