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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
894
total RNA-seq
403
ChIP-seq
173
DNase-seq
156
ATAC-seq
16
WGBS
16
small RNA-seq
Assay category
910
Transcription
403
DNA binding
329
DNA accessibility
16
DNA methylation
Target of assay
312
histone modification
311
histone
183
broad histone mark
128
narrow histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
163
June, 2019
162
May, 2020
October, 2019
158
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1544
bam
1513
bigWig
909
tsv
692
bed narrowPeak
509
bigBed narrowPeak
280
fastq
200
bed bed3+
187
bed broadPeak
172
bigBed broadPeak
76
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
Organism
1652
Homo sapiens
Biosample type
1658
tissue
514
primary cell
444
cell line
261
in vitro differentiated cells
3
stem cell
Organ
480
connective tissue
422
adipose tissue
386
pancreas
232
liver
163
kidney
144
heart
125
brain
84
blood vessel
84
vasculature
66
bone element
44
limb
42
musculature of body
41
artery
18
ureter
16
spleen
8
skeleton
3
eye
Project
1656
AMP
2
T1D
Genome assembly (visualization)
1658
GRCh38
1592
hg19
Lab
1580
AMP-T2D consortium
75
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
BIOSAMPLE
ASSAY
1658 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
266
25
1
22
liver
146
70
2
1
kidney
18
13
75
bone tissue
58
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