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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
912
total RNA-seq
452
ChIP-seq
215
ATAC-seq
174
single cell RNA-seq
164
DNase-seq
87
RNA microarray
28
snATAC-seq
21
pCHi-C
17
WGBS
16
small RNA-seq
15
Hi-C
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1102
Transcription
452
DNA binding
409
DNA accessibility
25
DNA methylation
15
3D chromatin structure
Target of assay
351
histone
351
histone modification
199
broad histone mark
152
narrow histone mark
93
control
10
transcription factor
8
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
118
July, 2018
115
May, 2019
109
August, 2017
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1721
bam
1572
bigWig
1068
tsv
793
bed narrowPeak
514
bigBed narrowPeak
fastq
209
bed broadPeak
201
bed bed3+
189
tagAlign
172
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2116
Homo sapiens
Biosample type
2118
tissue
645
primary cell
245
in vitro differentiated cells
205
cell line
6
stem cell
Organ
502
connective tissue
444
adipose tissue
295
kidney
289
pancreas
272
liver
265
heart
167
brain
158
bone element
107
blood vessel
107
vasculature
80
musculature of body
53
limb
47
artery
35
eye
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2021
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1378
GRCh38
1298
hg19
Lab
1832
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
89
inconsistent ontology term
9
audit script error
month_released!
October, 2019
files.file_type!
fastq
BIOSAMPLE
ASSAY
2118 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
1
liver
166
73
20
1
1
2
1
1
islet of Langerhans
181
22
35
7
3
1
4
kidney
49
23
75
64
13
6
1
1
1
bone element
84
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