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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
618
total RNA-seq
599
ChIP-seq
239
ATAC-seq
174
single cell RNA-seq
172
DNase-seq
86
RNA microarray
28
snATAC-seq
21
WGBS
20
pCHi-C
15
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
806
Transcription
599
DNA binding
443
DNA accessibility
32
DNA methylation
15
3D chromatin structure
Target of assay
393
histone modification
392
histone
224
broad histone mark
168
narrow histone mark
136
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1281
bam
1150
bigWig
780
bed narrowPeak
669
tsv
505
bigBed narrowPeak
334
fastq
206
bed broadPeak
195
bed bed3+
181
tagAlign
170
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2000
Homo sapiens
Biosample type
2008
tissue
1052
primary cell
632
cell line
385
in vitro differentiated cells
10
stem cell
Organ
545
connective tissue
502
pancreas
adipose tissue
355
liver
295
kidney
265
heart
179
brain
158
bone element
107
blood vessel
107
vasculature
82
musculature of body
53
limb
47
artery
35
eye
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1911
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1236
GRCh38
1169
hg19
Lab
1696
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2019
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2008 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
284
50
55
1
7
3
1
1
4
liver
166
140
20
1
2
3
1
1
1
1
kidney
49
23
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
4
1
1
1
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