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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
53
total RNA-seq
22
ATAC-seq
16
small RNA-seq
12
WGBS
6
RRBS
5
Hi-C
4
DNase-seq
4
pCHi-C
2
FAIRE-seq
Assay category
195
DNA binding
69
Transcription
28
DNA accessibility
18
DNA methylation
5
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
250
bam
223
bigWig
158
bed narrowPeak
55
tsv
49
bigBed narrowPeak
49
tagAlign
14
bed bedMethyl
14
bigBed bedMethyl
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
319
Homo sapiens
Biosample type
319
tissue
65
primary cell
30
cell line
8
in vitro differentiated cells
Organ
97
brain
74
limb
42
nerve
33
blood vessel
33
vasculature
28
heart
27
artery
21
eye
14
liver
12
connective tissue
11
adipose tissue
9
pancreas
8
kidney
7
musculature of body
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
319
AMP
Genome assembly (visualization)
223
hg19
222
GRCh38
Lab
319
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
319 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
WGBS
RRBS
Hi-C
DNase-seq
pCHi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
1
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
4
1
1
1
heart left ventricle
2
2
4
1
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