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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
453
total RNA-seq
84
RNA microarray
20
pCHi-C
10
ATAC-seq
7
Hi-C
6
single cell RNA-seq
3
snDrop-seq
2
ChIP-seq
Assay category
459
Transcription
10
DNA accessibility
7
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
480
tsv
461
bam
455
bigWig
89
txt
10
bed narrowPeak
7
bedpe bed3+
7
hic
6
csv
Organism
585
Homo sapiens
Biosample type
585
tissue
107
cell line
49
primary cell
34
in vitro differentiated cells
4
stem cell
Organ
445
connective tissue
387
adipose tissue
150
bone element
9
pancreas
8
kidney
8
skeleton
7
heart
6
limb
5
musculature of body
4
liver
3
blood vessel
3
vasculature
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
581
AMP
4
T1D
Genome assembly (visualization)
470
hg19
461
GRCh38
Lab
585
AMP-T2D consortium
Audit category:
86
inconsistent ontology term
5
audit script error
BIOSAMPLE
ASSAY
585 results
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Clear Filters
total RNA-seq
RNA microarray
pCHi-C
ATAC-seq
Hi-C
single cell RNA-seq
snDrop-seq
ChIP-seq
tissue
adipose tissue
381
1
bone element
84
bone tissue
58
islet of Langerhans
2
2
2
kidney
5
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