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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
pCHi-C
17
ChIP-seq
10
ATAC-seq
9
total RNA-seq
7
Hi-C
Assay category
17
DNA binding
10
DNA accessibility
9
Transcription
7
3D chromatin structure
Target of assay
14
histone
14
histone modification
10
broad histone mark
4
narrow histone mark
3
control
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
28
tsv
25
bigWig
24
bam
17
fastq
14
bed narrowPeak
14
tagAlign
7
bedpe bed3+
7
hic
6
bigBed narrowPeak
4
bed broadPeak
Organism
63
Homo sapiens
Biosample type
63
tissue
11
cell line
8
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
18
brain
14
pancreas
7
heart
5
musculature of body
3
blood vessel
3
liver
3
vasculature
2
adipose tissue
2
connective tissue
2
intestine
2
spleen
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
59
AMP
4
T1D
Genome assembly (visualization)
31
hg19
23
GRCh38
Lab
62
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
63 results
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Clear Filters
pCHi-C
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
brain
15
islet of Langerhans
2
3
2
psoas muscle
1
2
2
body of pancreas
4
aorta
1
1
1
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