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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
ChIP-seq
128
total RNA-seq
119
ATAC-seq
9
WGBS
5
RRBS
3
snATAC-seq
2
DNase-seq
2
single cell RNA-seq
1
FAIRE-seq
Assay category
176
DNA binding
130
Transcription
125
DNA accessibility
14
DNA methylation
Target of assay
124
histone modification
123
histone
73
broad histone mark
50
narrow histone mark
29
control
23
transcription factor
2
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
199
fastq
198
bigWig
194
bam
167
bed narrowPeak
93
tsv
59
tagAlign
27
bed bed3+
26
bed broadPeak
22
bigBed narrowPeak
11
txt
5
bed bed3
5
bed bedMethyl
5
bigBed bedMethyl
Organism
438
Homo sapiens
Biosample type
445
tissue
281
primary cell
84
in vitro differentiated cells
6
cell line
Organ
189
pancreas
94
liver
58
adipose tissue
58
connective tissue
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
28
musculature of body
14
epithelium
8
bone element
8
skeleton
1
brain
Project
427
AMP
18
T1D
Genome assembly (visualization)
252
hg19
193
GRCh38
Lab
363
AMP-T2D consortium
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
1
audit script error
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
445 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
snATAC-seq
DNase-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
42
100
29
2
1
1
liver
48
20
20
3
1
subcutaneous abdominal adipose tissue
36
3
coronary artery
35
skeletal muscle tissue
22
4
1
1
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