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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
89
total RNA-seq
10
ATAC-seq
9
WGBS
5
RRBS
2
DNase-seq
1
FAIRE-seq
Assay category
191
DNA binding
89
Transcription
14
DNA methylation
13
DNA accessibility
Target of assay
136
histone modification
135
histone
83
broad histone mark
52
narrow histone mark
32
control
23
transcription factor
2
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
192
bigWig
192
fastq
185
bam
89
tsv
78
bed narrowPeak
73
tagAlign
30
bed broadPeak
28
bigBed narrowPeak
26
bed bed3+
5
bed bedMethyl
5
bigBed bedMethyl
Organism
300
Homo sapiens
Biosample type
307
tissue
68
in vitro differentiated cells
59
primary cell
Organ
152
pancreas
58
adipose tissue
58
connective tissue
54
liver
26
musculature of body
16
brain
1
spleen
Project
307
AMP
Genome assembly (visualization)
193
hg19
172
GRCh38
Lab
306
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
307 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
1
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
brain
15
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