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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
444
total RNA-seq
84
RNA microarray
16
ATAC-seq
15
ChIP-seq
6
single cell RNA-seq
3
snDrop-seq
Assay category
450
Transcription
16
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
467
bam
458
bigWig
452
tsv
89
txt
20
bed narrowPeak
17
fastq
14
tagAlign
6
bigBed narrowPeak
6
csv
4
bed broadPeak
Organism
568
Homo sapiens
Biosample type
568
tissue
96
cell line
48
primary cell
26
in vitro differentiated cells
Organ
445
connective tissue
387
adipose tissue
150
bone element
16
brain
8
kidney
8
skeleton
6
limb
5
pancreas
1
liver
1
spleen
Project
568
AMP
Genome assembly (visualization)
466
GRCh38
465
hg19
Lab
567
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
84
inconsistent ontology term
5
audit script error
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
568 results
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Clear Filters
total RNA-seq
RNA microarray
ATAC-seq
ChIP-seq
single cell RNA-seq
snDrop-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
brain
15
kidney
5
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