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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
222
ATAC-seq
173
DNase-seq
168
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
DNA binding
427
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
160
June, 2019
143
May, 2020
120
July, 2018
108
August, 2017
70
July, 2019
66
May, 2022
60
February, 2023
47
September, 2023
44
October, 2019
40
May, 2021
40
November, 2019
35
March, 2020
22
February, 2020
19
April, 2020
16
November, 2018
15
May, 2023
8
January, 2021
8
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1171
bam
1144
bigWig
1062
tsv
346
bed narrowPeak
179
bigBed narrowPeak
173
bed broadPeak
172
bed bed3+
171
bigBed broadPeak
157
fastq
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1808
Homo sapiens
Biosample type
1810
tissue
798
primary cell
196
in vitro differentiated cells
118
cell line
7
stem cell
Organ
473
connective tissue
415
adipose tissue
388
pancreas
272
kidney
206
liver
190
heart
158
bone element
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1715
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1221
GRCh38
1213
hg19
Lab
1498
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
organ_slims!
blood vessel
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
1810 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
3
3
1
islet of Langerhans
298
68
1
7
4
3
1
1
4
kidney
49
75
13
64
6
1
1
1
liver
167
20
2
1
3
1
1
1
1
bone element
84
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