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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
794
ChIP-seq
222
ATAC-seq
173
DNase-seq
168
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
794
DNA binding
Target of assay
539
histone modification
538
histone
291
narrow histone mark
247
broad histone mark
169
control
86
transcription factor
20
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
176
August, 2017
172
October, 2019
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2019
50
May, 2020
48
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
649
bam
518
bigWig
498
bed narrowPeak
320
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
787
Homo sapiens
Biosample type
794
tissue
478
cell line
259
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
117
pancreas
83
heart
74
connective tissue
73
adipose tissue
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
27
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
792
AMP
2
T1D
Genome assembly (visualization)
493
GRCh38
472
hg19
Lab
794
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
794 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
subcutaneous abdominal adipose tissue
36
body of pancreas
35
heart left ventricle
35
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