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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
single cell RNA-seq
161
ATAC-seq
145
ChIP-seq
127
total RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
15
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
295
Transcription
190
DNA accessibility
145
DNA binding
21
DNA methylation
15
3D chromatin structure
Target of assay
127
histone
127
histone modification
66
narrow histone mark
61
broad histone mark
20
control
2
nucleotide modification
Date released
223
August, 2021
114
August, 2017
93
February, 2021
60
February, 2023
56
October, 2019
47
September, 2023
42
May, 2022
29
March, 2020
22
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
13
November, 2017
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1662
bigWig
1062
tsv
844
bed narrowPeak
499
bigBed narrowPeak
377
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
782
Homo sapiens
Biosample type
784
tissue
475
primary cell
103
in vitro differentiated cells
80
cell line
7
stem cell
Organ
201
kidney
141
heart
92
bone element
76
pancreas
73
liver
53
eye
49
connective tissue
48
adipose tissue
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
689
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
106
hg19
81
GRCh38
Lab
497
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
organ_slims!
blood vessel
files.file_type!
bam
BIOSAMPLE
ASSAY
784 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
64
75
49
6
1
1
islet of Langerhans
30
41
26
7
4
3
1
4
bone element
84
liver
1
20
23
20
1
1
1
3
subcutaneous abdominal adipose tissue
36
3
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