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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1024
total RNA-seq
465
ChIP-seq
222
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1214
Transcription
465
DNA binding
427
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
544
histone modification
543
histone
narrow histone mark
248
broad histone mark
142
control
76
transcription factor
14
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
234
August, 2017
223
August, 2021
166
May, 2020
160
June, 2019
120
July, 2018
91
October, 2019
70
July, 2019
66
May, 2022
October, 2018
60
February, 2023
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
46
May, 2019
40
May, 2021
40
November, 2019
35
March, 2020
26
November, 2018
25
May, 2024
22
February, 2020
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1532
bam
1418
bigWig
1062
tsv
602
bed narrowPeak
375
bigBed narrowPeak
296
fastq
194
bed bed3+
193
bed broadPeak
171
bigBed broadPeak
157
txt
128
tagAlign
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2268
Homo sapiens
Biosample type
2275
tissue
947
primary cell
577
cell line
339
in vitro differentiated cells
9
stem cell
Organ
511
connective tissue
453
adipose tissue
433
pancreas
317
liver
289
kidney
275
heart
158
bone element
151
brain
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2180
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1487
GRCh38
1430
hg19
Lab
1938
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
organ_slims!
blood vessel
month_released!
October, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2275 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
34
68
6
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
1
2
3
1
1
1
1
kidney
49
17
75
64
13
6
1
1
1
bone element
84
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