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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
582
total RNA-seq
254
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
770
Transcription
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
2
control
2
nucleotide modification
Date released
228
August, 2021
162
June, 2019
143
May, 2020
120
July, 2018
101
August, 2017
101
February, 2021
94
February, 2023
67
July, 2019
66
May, 2022
47
September, 2023
46
October, 2019
40
May, 2021
39
November, 2019
37
March, 2020
23
February, 2020
19
April, 2020
15
November, 2018
14
May, 2023
8
January, 2021
7
October, 2017
6
April, 2018
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
724
bam
695
bigWig
619
tsv
383
bed narrowPeak
180
bigBed narrowPeak
176
bed broadPeak
175
bed bed3+
174
bigBed broadPeak
157
txt
151
fastq
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1396
Homo sapiens
Biosample type
1397
tissue
782
primary cell
178
cell line
166
in vitro differentiated cells
6
stem cell
Organ
connective tissue
415
adipose tissue
388
pancreas
272
kidney
206
liver
190
heart
158
bone element
60
blood vessel
60
vasculature
56
brain
56
limb
54
eye
53
musculature of body
45
artery
20
lung
18
ureter
16
skeleton
15
epithelium
8
nerve
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1302
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
807
GRCh38
763
hg19
Lab
1085
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
9
audit script error
organ_slims!
connective tissue
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
1397 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
68
1
7
4
3
1
1
4
kidney
49
75
13
64
6
1
1
1
liver
167
20
2
1
1
3
1
1
1
bone element
84
coronary artery
1
36
2
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