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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
556
ChIP-seq
449
total RNA-seq
175
DNase-seq
39
ATAC-seq
14
WGBS
14
small RNA-seq
4
FAIRE-seq
Assay category
556
DNA binding
463
Transcription
218
DNA accessibility
14
DNA methylation
Target of assay
485
histone modification
484
histone
251
narrow histone mark
233
broad histone mark
71
transcription factor
17
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
170
May, 2020
162
June, 2019
161
August, 2017
159
October, 2019
116
July, 2018
93
May, 2019
65
April, 2019
57
November, 2017
53
July, 2019
40
October, 2018
38
May, 2021
36
December, 2017
22
November, 2018
20
May, 2022
19
November, 2019
13
October, 2017
11
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
1
January, 2018
Available data
1409
bam
1251
bigWig
931
bed narrowPeak
619
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1245
Homo sapiens
Biosample type
1251
tissue
581
primary cell
522
cell line
202
in vitro differentiated cells
3
stem cell
Organ
connective tissue
423
adipose tissue
373
pancreas
265
liver
202
brain
117
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
1249
AMP
2
T1D
Genome assembly (visualization)
1194
GRCh38
1168
hg19
Lab
1230
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
1251 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
islet of Langerhans
29
266
1
3
1
liver
82
147
2
20
1
body of pancreas
26
2
4
4
2
2
heart left ventricle
29
3
3
2
2
heart
12
4
18
1
1
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