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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
793
ChIP-seq
556
total RNA-seq
216
ATAC-seq
176
DNase-seq
173
single cell RNA-seq
86
RNA microarray
27
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
793
DNA binding
743
Transcription
423
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
560
histone modification
559
histone
296
narrow histone mark
263
broad histone mark
163
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
227
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
39
March, 2020
39
November, 2019
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1385
bam
1231
bigWig
893
bed narrowPeak
619
tsv
551
bigBed narrowPeak
310
fastq
230
tagAlign
210
bed broadPeak
198
bed bed3+
174
bigBed broadPeak
150
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2116
Homo sapiens
Biosample type
2124
tissue
915
primary cell
662
cell line
297
in vitro differentiated cells
9
stem cell
Organ
connective tissue
488
adipose tissue
481
pancreas
321
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2027
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1339
GRCh38
1234
hg19
Lab
1876
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
connective tissue
month_released!
May, 2022
BIOSAMPLE
ASSAY
2124 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
70
292
50
1
7
4
3
1
1
4
liver
145
147
2
1
1
3
1
1
1
kidney
27
49
75
13
64
6
1
1
1
bone element
84
heart left ventricle
35
3
2
3
18
1
4
1
1
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