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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
780
ChIP-seq
87
RNA microarray
87
single cell RNA-seq
21
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
MeRIP-seq
3
snDrop-seq
Assay category
1118
Transcription
780
DNA binding
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
529
histone modification
528
histone
282
narrow histone mark
246
broad histone mark
171
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
279
August, 2017
210
October, 2019
193
May, 2020
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
67
August, 2021
53
July, 2019
48
December, 2017
47
September, 2023
38
May, 2021
30
March, 2020
27
May, 2022
23
April, 2019
22
February, 2020
20
November, 2019
16
November, 2018
15
October, 2017
13
February, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
3
December, 2019
1
March, 2019
Available data
1561
bam
1422
bigWig
963
tsv
488
bed narrowPeak
336
fastq
316
bigBed narrowPeak
238
tagAlign
156
txt
35
bed broadPeak
28
bed bed3+
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2047
Homo sapiens
Biosample type
2055
tissue
790
primary cell
573
cell line
350
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1989
AMP
47
KPMP
10
T1D
9
LungMap
Genome assembly (visualization)
1399
GRCh38
1383
hg19
Lab
1898
AMP-T2D consortium
61
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
gonad
heart
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
2055 results
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total RNA-seq
ChIP-seq
RNA microarray
single cell RNA-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
2
1
3
islet of Langerhans
292
67
6
4
3
1
4
liver
167
145
1
1
3
1
1
1
kidney
49
27
64
1
1
bone element
84
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