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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
940
total RNA-seq
784
ChIP-seq
151
DNase-seq
92
ATAC-seq
87
RNA microarray
21
pCHi-C
19
WGBS
15
small RNA-seq
14
single cell RNA-seq
10
Hi-C
10
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
969
Transcription
784
DNA binding
249
DNA accessibility
29
DNA methylation
10
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
169
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
234
October, 2019
193
May, 2020
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
57
July, 2019
48
December, 2017
41
February, 2023
40
November, 2019
36
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
22
February, 2020
22
October, 2017
7
August, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1750
bam
1594
bigWig
964
tsv
709
bed narrowPeak
473
bigBed narrowPeak
351
fastq
238
tagAlign
184
bed broadPeak
178
bed bed3+
149
bigBed broadPeak
94
txt
18
bed bedMethyl
18
bigBed bedMethyl
6
bedpe bed3+
6
csv
6
hic
5
bed bed3
1
tagAlign bed3+
Organism
2144
Homo sapiens
Biosample type
2152
tissue
549
cell line
511
primary cell
339
in vitro differentiated cells
8
stem cell
Organ
547
connective tissue
488
adipose tissue
442
pancreas
321
liver
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
110
kidney
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2148
AMP
4
T1D
Genome assembly (visualization)
1599
hg19
1590
GRCh38
Lab
2152
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
BIOSAMPLE
ASSAY
2152 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
RNA microarray
pCHi-C
WGBS
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
286
71
1
34
4
1
1
1
1
adipose tissue
382
2
3
1
3
liver
147
145
2
1
3
1
1
1
1
bone element
84
bone tissue
58
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