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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1005
total RNA-seq
575
ChIP-seq
217
ATAC-seq
124
DNase-seq
87
RNA microarray
81
single cell RNA-seq
28
snATAC-seq
20
pCHi-C
19
WGBS
13
Hi-C
11
small RNA-seq
9
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1097
Transcription
575
DNA binding
372
DNA accessibility
28
DNA methylation
13
3D chromatin structure
Target of assay
349
histone modification
348
histone
176
broad histone mark
172
narrow histone mark
146
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
193
May, 2020
148
October, 2019
137
August, 2021
120
July, 2018
111
June, 2019
74
October, 2018
66
May, 2019
66
May, 2022
58
February, 2023
48
December, 2017
47
September, 2023
46
July, 2019
40
November, 2019
38
May, 2021
31
March, 2020
24
November, 2018
23
April, 2019
19
April, 2020
15
May, 2023
10
February, 2020
8
January, 2021
7
December, 2018
7
January, 2019
7
October, 2017
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1549
bam
1413
bigWig
942
tsv
619
bed narrowPeak
365
fastq
357
bigBed narrowPeak
157
txt
151
bed bed3+
150
bed broadPeak
122
bigBed broadPeak
120
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
4
bed bed3
1
bedpe
Organism
2190
Homo sapiens
Biosample type
2199
tissue
1054
primary cell
596
cell line
393
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
heart
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2102
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1499
hg19
1465
GRCh38
Lab
1887
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
brain
BIOSAMPLE
ASSAY
2199 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
298
71
67
1
7
4
3
1
4
1
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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