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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
852
total RNA-seq
629
ChIP-seq
200
ATAC-seq
147
DNase-seq
87
RNA microarray
80
single cell RNA-seq
28
snATAC-seq
21
pCHi-C
15
WGBS
12
Hi-C
12
small RNA-seq
9
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
944
Transcription
629
DNA binding
379
DNA accessibility
24
DNA methylation
12
3D chromatin structure
Target of assay
463
histone
463
histone modification
242
narrow histone mark
221
broad histone mark
125
control
43
transcription factor
16
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
230
August, 2017
228
October, 2019
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
59
February, 2023
49
July, 2019
47
September, 2023
40
November, 2019
38
May, 2021
30
March, 2020
26
May, 2022
23
April, 2019
23
October, 2017
21
February, 2020
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1487
bam
1350
bigWig
811
tsv
698
bed narrowPeak
424
bigBed narrowPeak
294
fastq
183
bed broadPeak
172
bed bed3+
168
tagAlign
157
txt
146
bigBed broadPeak
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
7
hic
6
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2094
Homo sapiens
Biosample type
2103
tissue
1061
primary cell
378
in vitro differentiated cells
195
cell line
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
liver
299
kidney
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2006
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1430
GRCh38
1374
hg19
Lab
1831
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
heart
liver
BIOSAMPLE
ASSAY
2103 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
3
kidney
49
27
75
13
64
6
1
1
1
bone element
84
bone tissue
58
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