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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
535
ChIP-seq
144
ATAC-seq
109
DNase-seq
3
FAIRE-seq
Assay category
535
DNA binding
256
DNA accessibility
Target of assay
465
histone modification
464
histone
241
narrow histone mark
223
broad histone mark
70
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
149
October, 2019
95
June, 2019
93
May, 2019
66
August, 2017
63
February, 2023
58
November, 2017
47
April, 2019
45
October, 2018
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
17
November, 2018
12
October, 2017
8
February, 2021
6
January, 2019
6
July, 2019
3
December, 2018
2
March, 2020
Available data
1809
bam
1641
bigWig
1064
tsv
791
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
785
Homo sapiens
Biosample type
791
tissue
396
cell line
273
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
192
brain
kidney
133
heart
123
pancreas
113
liver
100
blood vessel
100
vasculature
92
limb
62
artery
51
musculature of body
30
eye
27
nerve
18
ureter
14
spleen
13
adipose tissue
13
connective tissue
12
epithelium
8
bone element
8
skeleton
1
pituitary gland
Project
789
AMP
2
T1D
Genome assembly (visualization)
691
GRCh38
689
hg19
Lab
753
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
kidney
BIOSAMPLE
ASSAY
791 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
82
20
2
islet of Langerhans
20
37
1
1
coronary artery
3
36
2
body of pancreas
26
4
4
heart left ventricle
29
2
3
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