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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
140
DNase-seq
28
ChIP-seq
1
snATAC-seq
Assay category
141
DNA accessibility
28
DNA binding
Target of assay
13
transcription factor
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
3
control
2
RNA binding protein
Date released
131
June, 2019
26
August, 2017
9
November, 2018
2
September, 2017
1
May, 2022
Available data
1793
bam
1641
bigWig
1069
tsv
852
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
169
Homo sapiens
Biosample type
169
tissue
37
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
limb
33
musculature of body
27
brain
27
heart
27
pancreas
18
ureter
6
adipose tissue
6
connective tissue
6
liver
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
spleen
Project
169
AMP
Genome assembly (visualization)
168
GRCh38
153
hg19
Lab
169
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
14
missing controlled_by
organ_slims!
limb
BIOSAMPLE
ASSAY
169 results
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DNase-seq
ChIP-seq
snATAC-seq
tissue
islet of Langerhans
21
heart
18
brain
14
kidney
13
renal cortex interstitium
11
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