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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
743
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
24
pCHi-C
23
WGBS
16
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
936
Transcription
743
DNA binding
217
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
520
histone modification
519
histone
277
narrow histone mark
242
broad histone mark
157
control
66
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
235
October, 2019
227
August, 2021
193
May, 2020
130
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
41
May, 2022
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
12
November, 2018
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1478
bam
1359
bigWig
821
bed narrowPeak
801
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2052
Homo sapiens
Biosample type
2054
tissue
705
primary cell
569
cell line
366
in vitro differentiated cells
7
stem cell
Organ
541
connective tissue
482
adipose tissue
pancreas
355
liver
246
heart
238
brain
231
kidney
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
49
musculature of body
41
nerve
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1987
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1256
GRCh38
1178
hg19
Lab
1805
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
12
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
pancreas
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
2054 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
382
2
3
1
3
liver
167
142
20
1
1
3
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
1
4
1
1
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