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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
7
DNase-seq
6
WGBS
5
ATAC-seq
3
RRBS
Assay category
143
DNA binding
12
DNA accessibility
9
DNA methylation
Target of assay
62
transcription factor
49
control
32
histone modification
31
histone
20
broad histone mark
11
narrow histone mark
7
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
48
August, 2017
48
December, 2017
23
October, 2018
19
November, 2018
12
October, 2017
7
December, 2018
7
January, 2019
Available data
1478
bam
1359
bigWig
821
bed narrowPeak
801
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
164
Homo sapiens
Biosample type
427
cell line
164
tissue
151
primary cell
141
in vitro differentiated cells
4
stem cell
Organ
pancreas
83
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
164
AMP
Genome assembly (visualization)
110
GRCh38
108
hg19
Lab
164
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
pancreas
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
DNase-seq
WGBS
ATAC-seq
RRBS
tissue
liver
67
2
1
1
spleen
20
1
2
1
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
right lobe of liver
10
1
1
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