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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
630
ChIP-seq
196
ATAC-seq
174
single cell RNA-seq
170
DNase-seq
87
RNA microarray
24
pCHi-C
17
snATAC-seq
14
WGBS
14
small RNA-seq
12
Hi-C
4
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
630
DNA binding
385
DNA accessibility
18
DNA methylation
12
3D chromatin structure
Target of assay
436
histone
436
histone modification
245
narrow histone mark
191
broad histone mark
138
control
56
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
71
July, 2019
48
December, 2017
47
September, 2023
42
May, 2022
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1435
bam
1311
bigWig
801
tsv
787
bed narrowPeak
491
bigBed narrowPeak
179
bed broadPeak
179
tagAlign
171
bed bed3+
170
bigBed broadPeak
151
txt
116
fastq
64
xls
14
bed bedMethyl
14
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2093
Homo sapiens
Biosample type
2095
tissue
724
primary cell
570
cell line
323
in vitro differentiated cells
10
stem cell
Organ
490
connective tissue
431
adipose tissue
pancreas
307
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2028
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1398
GRCh38
1292
hg19
Lab
1846
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
4
missing controlled_by
organ_slims!
pancreas
month_released!
August, 2017
BIOSAMPLE
ASSAY
2095 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
1
liver
167
97
20
1
2
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
35
2
18
3
1
4
1
1
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