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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
750
ChIP-seq
686
total RNA-seq
186
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
RNA microarray
3
snDrop-seq
2
FAIRE-seq
Assay category
874
Transcription
750
DNA binding
376
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
520
histone modification
519
histone
277
narrow histone mark
242
broad histone mark
158
control
72
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
395
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
113
May, 2019
82
November, 2017
80
April, 2019
71
July, 2019
69
February, 2023
48
December, 2017
47
September, 2023
42
May, 2022
31
March, 2020
24
February, 2020
23
October, 2018
19
April, 2020
19
November, 2018
18
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1412
bam
1301
bigWig
813
bed narrowPeak
743
tsv
499
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
164
fastq
64
xls
63
txt
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
1
bed bed3
1
tagAlign bed3+
Organism
2072
Homo sapiens
Biosample type
2074
tissue
741
primary cell
570
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2007
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1367
GRCh38
1272
hg19
Lab
1825
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
8
audit script error
7
inconsistent ontology term
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
pancreas
bone element
BIOSAMPLE
ASSAY
2074 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
RNA microarray
snDrop-seq
FAIRE-seq
tissue
adipose tissue
2
382
3
1
3
liver
145
167
20
1
2
1
3
1
1
1
kidney
27
49
75
64
13
6
1
1
1
heart left ventricle
35
3
2
18
3
1
4
1
1
islet of Langerhans
21
14
10
4
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