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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
231
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
388
DNA accessibility
231
DNA binding
32
DNA methylation
12
3D chromatin structure
Target of assay
520
histone modification
histone
277
narrow histone mark
242
broad histone mark
158
control
72
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
227
August, 2021
166
May, 2020
159
June, 2019
77
February, 2023
71
July, 2019
71
October, 2019
54
August, 2017
47
September, 2023
43
December, 2017
42
May, 2022
31
March, 2020
25
May, 2019
24
February, 2020
23
October, 2018
20
April, 2019
19
April, 2020
19
November, 2018
15
May, 2023
12
November, 2017
7
December, 2018
6
October, 2017
3
December, 2019
3
May, 2021
2
January, 2018
1
January, 2019
1
November, 2019
Available data
1072
bam
938
bigWig
801
tsv
399
bed narrowPeak
230
bigBed narrowPeak
178
bed bed3+
170
bed broadPeak
170
bigBed broadPeak
151
txt
133
fastq
64
xls
50
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
Organism
1711
Homo sapiens
Biosample type
1713
tissue
563
primary cell
551
cell line
280
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
pancreas
292
liver
279
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1646
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1034
GRCh38
970
hg19
Lab
1464
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
12
missing controlled_by
organ_slims!
pancreas
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1713 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
1
3
1
3
liver
167
81
20
1
2
1
3
1
1
1
kidney
49
7
75
64
13
6
1
1
1
bone element
84
bone tissue
58
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