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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
316
ChIP-seq
150
DNase-seq
4
FAIRE-seq
3
ATAC-seq
Assay category
316
DNA binding
157
DNA accessibility
Target of assay
258
histone
258
histone modification
170
broad histone mark
88
narrow histone mark
58
transcription factor
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
136
June, 2019
78
May, 2019
57
November, 2017
47
October, 2019
45
October, 2018
36
December, 2017
22
August, 2017
18
April, 2019
17
November, 2018
6
January, 2019
6
October, 2017
3
December, 2018
2
July, 2019
Available data
1775
bam
1615
bigWig
965
tsv
811
bed narrowPeak
473
bigBed narrowPeak
377
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
157
txt
149
bigBed broadPeak
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
467
Homo sapiens
Biosample type
473
tissue
355
cell line
103
primary cell
17
in vitro differentiated cells
Organ
116
brain
heart
87
kidney
84
limb
62
blood vessel
62
pancreas
62
vasculature
49
liver
38
musculature of body
26
nerve
25
artery
18
ureter
13
spleen
10
adipose tissue
10
connective tissue
3
eye
Project
473
AMP
Genome assembly (visualization)
467
GRCh38
407
hg19
Lab
473
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
pericardium
heart
BIOSAMPLE
ASSAY
473 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
body of pancreas
26
4
tibial nerve
24
2
brain
6
14
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