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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
509
ChIP-seq
122
ATAC-seq
94
DNase-seq
15
small RNA-seq
10
Hi-C
7
RRBS
3
FAIRE-seq
1
snATAC-seq
Assay category
916
Transcription
509
DNA binding
220
DNA accessibility
10
3D chromatin structure
7
DNA methylation
Target of assay
418
histone modification
417
histone
229
narrow histone mark
188
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
161
October, 2019
116
July, 2018
93
May, 2019
80
June, 2019
55
July, 2019
47
April, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
18
March, 2020
17
November, 2018
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
May, 2023
Available data
1558
bam
1557
bigWig
916
tsv
689
bed narrowPeak
407
bigBed narrowPeak
294
fastq
129
bed broadPeak
122
bed bed3+
105
tagAlign
93
bigBed broadPeak
10
hic
9
bedpe bed3+
7
bed bedMethyl
7
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1656
Homo sapiens
Biosample type
1662
tissue
602
primary cell
518
cell line
297
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
113
heart
96
limb
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
pericardium
1
pituitary gland
Project
1660
AMP
2
T1D
Genome assembly (visualization)
1694
GRCh38
1662
hg19
Lab
1620
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
pericardium
kidney
BIOSAMPLE
ASSAY
1662 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
42
1
2
1
1
liver
147
83
20
2
1
1
1
bone tissue
58
heart left ventricle
3
29
2
3
1
1
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