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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
987
total RNA-seq
880
ChIP-seq
185
ATAC-seq
110
DNase-seq
101
single cell RNA-seq
85
RNA microarray
27
WGBS
25
pCHi-C
15
Hi-C
15
small RNA-seq
12
snATAC-seq
9
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1103
Transcription
880
DNA binding
310
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
284
August, 2017
238
October, 2019
193
May, 2020
120
July, 2018
115
May, 2019
101
August, 2021
95
February, 2023
95
June, 2019
82
November, 2017
74
October, 2018
72
July, 2019
66
May, 2022
57
April, 2019
48
December, 2017
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
August, 2022
1
May, 2023
Available data
1809
bam
1681
bigWig
1064
tsv
831
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
23
bed bedMethyl
23
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
2450
Homo sapiens
Biosample type
2458
tissue
1051
primary cell
643
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
313
heart
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2427
AMP
31
T1D
LungMap
Genome assembly (visualization)
1694
GRCh38
1662
hg19
Lab
2314
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
pericardium
kidney
award.project!
LungMap
BIOSAMPLE
ASSAY
2458 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
snATAC-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
298
71
68
1
4
3
7
1
4
1
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
bone element
84
heart left ventricle
3
35
2
3
18
4
1
1
1
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