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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
899
total RNA-seq
510
ChIP-seq
129
DNase-seq
121
ATAC-seq
15
small RNA-seq
9
Hi-C
6
RRBS
4
FAIRE-seq
Assay category
914
Transcription
510
DNA binding
254
DNA accessibility
9
3D chromatin structure
6
DNA methylation
Target of assay
419
histone modification
418
histone
232
narrow histone mark
186
broad histone mark
88
transcription factor
22
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
170
May, 2020
165
August, 2017
163
October, 2019
116
July, 2018
115
June, 2019
87
May, 2019
65
April, 2019
57
July, 2019
45
October, 2018
40
November, 2019
38
May, 2021
38
May, 2022
36
December, 2017
33
February, 2023
17
November, 2018
14
March, 2020
13
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
September, 2017
1
August, 2021
1
January, 2018
1
May, 2023
Available data
1606
bam
1591
bigWig
914
tsv
726
bed narrowPeak
455
bigBed narrowPeak
292
fastq
156
bed bed3+
151
bed broadPeak
128
bigBed broadPeak
92
tagAlign
9
hic
7
bedpe bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1687
Homo sapiens
Biosample type
1693
tissue
615
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
pericardium
1
pituitary gland
Project
1691
AMP
2
T1D
Genome assembly (visualization)
1817
GRCh38
1693
hg19
Lab
1650
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
pericardium
musculature of body
BIOSAMPLE
ASSAY
1693 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
1
42
2
1
1
liver
147
83
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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